1. 软件下载

[root@3eb13a5fb4e6 software]$wget https://github.com/amkozlov/raxml-ng/releases/download/1.2.2/raxml-ng_v1.2.2_linux_x86_64.zip
[root@3eb13a5fb4e6 software]$unzip raxml-ng_v1.2.2_linux_x86_64.zip -d ./raxml-ng
[root@3eb13a5fb4e6 raxml-ng]$./raxml-ng 
RAxML-NG v. 1.2.2-master released on 30.04.2024 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.

2. 建树

# 构树+bootstrap分析
## 示例代码：输出结果为out_treeBS.raxml.support
raxml-ng -all -msa sequences.phy--model GTR+G --bs-trees 100 --prefix out_treeBS --threads 5 --seed 2 1>raxml_bs.log 2>raxml_bs.err

3. 进化树的美化

使用ITOL网站：https://itol.embl.de/